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Posts Tagged evolution

aquatic apes & custard elephants Alison Campbell May 14

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The ‘aquatic ape’ hypothesis (it can’t be described as a theory) has been around for quite a while, & in fact I’ve blogged about it before. So I was sorry to hear that Sir David Attenborough, who’s done so much to promote conservation issues and enhance our understanding of the natural world, appeared to have given the idea some support. He’s certainly taken some flak for this (see here, for example), although at the same time other – ahem! – news outlets have picked up the ball and trotted off down the garden path with it.

Briefly, the aquatic ape hypothesis (I will NOT call it a theory) purports to explain the evolution of a number of aspects of our morphology: our relative hairlessness & the distribution of that hair, bipedalism, the way so many people like fish (I will put my hand up as an exception to this), distribution of body fat, & so on. ** Unfortunately for this particular just-so story, there’s good evidence that all these features did not evolve at the same time. Bipedalism, for example, pre-dates the chimp-human divergence, but the addition of fish to the diet seems to have appeared much later. Nor is there necessarily strong evidence of any links between a particular feature & the life aquatic. For example, while cetaceans are essentially hairless, seals, sealions and their relatives are covered with dense coats of fur.

Anyway, the hypothesis has recently been the focus of some entertaining parodies, among them the ‘space ape’ version (face-to-face copulation would really have been the only option, dontcha know? for otherwise the jetpacks would get in the way) and – as a conclusion to his explanation of why the aquatic ape idea doesn’t stack up – Henry Gee’s thought experiment involving the unlikely combination of elephants and custard.

Enjoy.

** "& so on" includes the sinuses in our skulls (another feature that reinforces our African origins). Apparently they provided a buoyancy aid – yet they’re found in all mammals regardless of habitat.

[EDIT] However, courtesy of one Smut Clyde I find that the aquatic ape proposal has nothing on this.

 

 

 

 

 

 

 

the gastric-brooding frog – not quite back from the dead Alison Campbell May 08

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I first found out about gastric-brooding frogs (Rheobatrachus silus) when reading Stephen Jay Gould’s essay "Here Goes Nothing" (as published in the 1991 book Bully for Brontosaurus). As he said, these frogs really do live up to their name: the frog

swallows its fertilised eggs, broods tadpoles in its stomach, and gives birth to young frogs through its mouth.

Gould’s tale first introduces another example of the ability of natural selection to shape truly strange behaviour: male Rhinoderma darwini frogs swallow the eggs they’ve fertilised and brood them, not in their stomachs, but in their throat pouches. These are the same pouches that male frogs inflate with air & use in croaking (& whistling, & chirping, depending on species) during courtship, which means that a brooding male is rendered voiceless for the duration. However, it doesn’t stop them feeding normally, something that was first demonstrated way back in 1888 by biologist G.B.Howes (Gould, 1991). I was interested to find out, while researching this post, that the eggs aren’t ingested immediately after fertilisation: they’re laid in damp leaf litter and the male remains close by, but waits until the embryonic tadpoles are wriggling around inside the egg membrane before taking them up in his mouth. (I’m guessing that the behaviour’s triggered by the sight of the wriggling tadpoles.)

As for the gastric-brooding species: Gould provides an engaging description of how this habit was uncovered. Until 1979

[n]atural birth had not yet been observed in Rheobatrachus. All young had either emerged unobserved or been vomited forth as a violent reaction after hatching.

However, scientists finally managed to get a gravid (I hope that’s the right word in these circumstances!) female in an aquarium with their cameras all at the ready:

The mother "partially emerged from the water, shook her head, opened her mouth, and two babies actively struggled out."

It’s no small feat to incubate froglets in this way:

This… female, about two inches long, weighed 11.62 grams after birth. Her twenty-six children weighted 7.66 grams, or 66 percent of her weight without them.

And of course, the incubating female must stop eating and switch off production of gastric juices for the duration!

Sadly, confirmation of this highly unusual method of parental care was rapidly followed by news that the species appeared to be extinct in the wild. Which is why I was so intrigued by my student’s news of its resurrection. However, it seems that reports of that resurrection may have been somewhat exaggerated. A quick search turned up several articles (this one’s a good example) that describe what’s been achieved so far: R.silus tissues that had been in the freezer were thawed, and cell nuclei from those tissues were implanted in enucleate eggs from another, distantly-related, species of frog (an example of somatic cell nuclear transfer). Some of those went on to an early (but unspecified) stage of embryonic development before being frozen in their turn, to await possible reanimation in the future.

In other words, R.silus froglets won’t be hopping around just yet. (And I’m moved to wonder how achievable the aim of the Lazarus project actually is, as it relates to this species. After all, if the gastric brooding part is an essential part of development, where’s the stomach going to come from?)

S.J.Gould (1991) Bully for Brontosaurus. Penguin Books.

tool use – even more widespread than you thought Alison Campbell May 07

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Yesterday my ‘Facebook science feed’ (ie daily browsing) brought me this stunning image (click the picture for the hyperlink). It’s from the book Thinkers of the Jungle: the Orangutan Report (Shuster, Smits & Ullal, 2008) & shows a young orangutan apparently using a long stick in lieu of a spear, copying local fishermen as they hunted with spears. (It’s been blogged about here by Kambiz Kamrani.)

Which is pretty darned amazing. Tool use, & various tool cultures, are now quite well-documented in our nearest living relatives, the chimpanzees, but this is the first time I’d heard about it in a wild orangutan. Also novel: the concept that another great ape might also sometimes eat vertebrates (again, well-documented in the members of some chimpanzee troops). So I decided to dig a little deeper.

It turns out that orangutans do on occasion eat meat, although reports of this are rare. Back in 1997 Sri Suci Utami & Jan van Hooff reported on a total of seven incidents of carnivory by three different female orangutans in Sumatra. More recently Madelaine Hardus & her colleagues (2012) looked at a few additional instances of this behaviour – which in all recorded cases has female orangutans doing the eating and slow lorises as the prey – and considered whether it might be seasonal and related to the availability of other food sources (they felt that it was). Both research teams characterised the behaviour as opportunistic as there was no evidence of any organised hunting activity: it was more a case of a foraging orangutan happening across a slow loris. And they noted that the data are too few to allow any firm conclusions about either the frequency of this behaviour or whether it might be skewed towards one gender or the other.

Nor was this the first documented example of tool use by these Asian great apes. While it’s apparently well-known in captive animals, Carel van Schaik first documented this behaviour among wild-living orangutans back in 1994, in Sumatra (apparently it’s not been observed in populations from Borneo). The animals he was watching were in relatively high densities and surprisingly tolerant of each other – plenty of opportunity to watch and learn from the activities of others, which may be why tool use hasn’t been seen in the wild in Borneo, where the animals are much more widely dispersed).

van Schaik documented the use of sticks to prise open extremely prickly fruit in order to get at the soft flesh within, but more recently he and a group of co-workers provided evidence that, like their cousins the chimps, orangutans in different areas have developed different cultures (around behaviours broader than simply using tools). Which demonstrates (again) that culture is not something that is solely ‘ours’, and suggests that such behaviour may have been around for a very long time indeed, given the antiquity of the split between the lineages leading to modern orangutans and (eventually) Homo sapiens. As van Schaik and his team concluded:

Hence, great-ape cultures exist, and may have done so for at least 14 million years.

 

M.E.Hardus, A.R.Lameira, A.Zulfa, S.S.Utami Atmoko, H.de Vries & S.A.Wich (2012) Behavioural, Ecological, and Evolutionary Aspects of Meat-Eating by Sumatran Orangutans (Pongo abelli). International Journal of Primatology 33: 287-304. DOI: 10.1007/s10764-011-9574-z

S.S.Utami & J.A.R.A.M.van Hooff (1997) Meat-Eating by Adult Female Sumatran Orangutans (Pongo pygmaeus abelli). American Journal of Primatology 43: 159-165

C.P.van Schaik, M.Ancrenaz, G.Borgen, B.Galdikas, C.D.Knott, I.Singleton, A.Suzuki, S.S.Utami & M.Merrill (2003) Orangutan Cultures and the Evolution of Material Culture. Science 299 (5603): 102-105. DOI: 10.1126/science.1078004

 

a little extrapolation is a dangerous thing Alison Campbell Apr 19

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The other day one of my friends sent me a link to this discussion of a recently published paper. (‘Published’ in the sense that it’s available through archiv arXiv, which I gather means it hasn’t been through peer review.) The actual paper is available here. Basically, the authors claim that life has increased in complexity – they’ve used genome size as their measure – as it’s evolved, and that extrapolating that trend backwards suggests that life evolved prior to the formation of the solar system.

But is genome size a particularly good proxy for complexity? Here’s the graph that underpins the conclusions reached by Sharov & Gordon:complexity vs time.jpg

Do you see what they’ve done there? ‘Worms’ – which worms? For after all, there are a lot of them: at least 10,000 species of flatworms, more than 80,000 species of roundworms (aka nematodes), and another 10,000 or so annelids (including the familiar earthworm), not to mention the less familiar taxa such as velvet worms & the priapulids. As for the arthropods – well, good old Daphnia has more functional genes than we do. (The poetical Cuttlefish has a nice take on this story here.)

And I see that plants & protists have been left out altogether – unless they’ve been lumped in under the general heading ‘eukaryotes’. Which is strange, because the overall genome size varies by 5 orders of magnitude** across the eukaryotes so far studied, so using a whole bunch of data points instead of the collective average, would make more sense. Unless that would spoil the nice straight line? (**Having said that, much of that variation is due to the number of introns & the quantity of non-coding DNA; however, the various regulatory sequence regions must surely come under the authors’ heading of ‘functional non-redundant genome’?)

I had also thought, on reading the review, that we were probably looking at an argument for panspermia. And I was right. This and other conclusions are presented in the abstract, & I note a certain amount of hubris in the assumption that humanity represents the only possibility of intelligent life in our universe (my emphasis).

(1) life took a long time (ca. 5 billion years) to reach the complexity of bacteria; (2) the environments in which life originated and evolved to the prokaryote stage may have been quite different from those envisaged on Earth; (3) there was no intelligent life in our universe prior to the origin of Earth, thus Earth could not have been deliberately seeded with life by intelligent aliens; (4) Earth was seeded by panspermia; (5) experimental replication of the origin of life from scratch may have to emulate many cumulative rare events; and (6) the Drake equation for guesstimating the number of civilizations in the universe is likely wrong, as intelligent life has just begun appearing in our universe.

A.A.Sharov & R.Gordon (2013) Life Before Earth arXiv:1304.3381v1  

PS Strangely, in a paper supposedly about biological evolution, the latter part of the article goes on to discuss technological (ie cultural) evolutionary change – I’m not convinced that it’s appropriate to segue between a claimed link for genetic complexity & time, into the undoubted complexity and rapid ‘evolution’ of technology; apples & oranges, guys.

are humans still evolving (a repeat visit) Alison Campbell Mar 20

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What follows is a piece I wrote (quite a while ago now) for students planning on sitting Scholarship Biology. It was intended to start them thinking :) I’ve just been asked to contribute to a panel discussion on RNZ around this subject, so thought it might be timely to re-post this article (I think time has been kind to it!).

Here’s a question to consider: are humans still evolving? What sort of evidence could we use to answer this question?

We do tend to view evolution as something that happened in the past, and see the study of evolution as a ‘historical’ science. But nothing could be further from the truth. Evolution is an ongoing process, and we can detect its influence on the present-day human gene pool just as easily as we can view the development of our species’ family tree.

Remember that evolution is essentially a change in a population’s gene pool, as the result of ‘drivers’ such as natural selection and genetic drift. And studies of present-day human evolution look just there, at our genes. Some of these studies are summarised in a [relatively] recent paper in Science (Michael Balter (2005) “Are humans still evolving?” Science 309: 234-237), which is the basis for this posting.

To some degree the answer to this question depends on whether we are talking about ‘western’ populations. In the developed world, the combination of modern medicine, new agricultural and technological techniques, and cultural changes have significantly reduced the effects of natural selection: individuals who in the ‘old days’ would have been removed from the population (by famine, warfare, or disease) without contributing to the gene pool, now survive and have children. But in the developing countries, people are still subject to these selection pressures, so it’s probably here that we should be looking for evidence of evolutionary change: the spread of alleles that give resistance to diseases such as malaria, for example.

In those parts of the world where malaria is endemic, anyone with a genotype giving resistance to malaria would be at a selective advantage: they’d be more likely to survive and reproduce, passing their advantageous combination of genes on to at least some of their children. The overlap between the geographic spread of malaria in Africa with the presence of the sickle-cell allele is an example: individuals heterozygous for this allele are at a selective advantage over unaffected individuals (and those homozygous for the allele) where malaria is present. And other gene loci also seem to be involved in resistance to malaria. Variants of the glucose-6-phosphate dehydrogenase gene (which is involved in cellular respiration), one of the Duffy blood group alleles, and one haemoglobin C allele are all more common where malaria is endemic.

Another example is that of the “CCR5” gene. This gene codes for CCR5, a surface protein on white blood cells that is also the docking site for the HIV virus. People homozygous for a mutation (‘delta 32’) in this gene are resistant to attack by HIV, and are thus at a selective advantage in areas where HIV, and AIDS, are common. Yet the mutation is most common in white Europeans, and very rare in other ethnic groups – including Africans. AIDS is far more common in Africa than in Europe, so these differences in allele frequency are difficult to explain – unless they are the result of some other selective pressure that predates the AIDS epidemic. Scientists have dated the origins of the delta 32 mutation to around 700 years ago, and the current hypothesis is that it provided protection against an epidemic disease of that time, perhaps plague or smallpox. Can you make a prediction about the future prevalence of this particular allele, given the relative frequency of AIDS in different parts of the world, and the availability of medical care for patients?

evolution – a good video for the classroom Alison Campbell Jan 16

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Over lunch, I was catching up with my reading on various blogs and found – via PZ on Pharyngulathis little gem on evolution. The others on offer at the Stated Clearly site look good too; it would be nice to see the authors attract the crowd-sourcing they need to make more of the videos on their extensive list of future projects.

 

a cute little piggy (but why do we find it so?) Alison Campbell Nov 17

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On Facebook yesterday, Science Alert posted a picture of a cute little piggy. Why, they asked,

do humans feel such love for baby animals? Assuredly, this is a psychology experiment waiting to happen!

Not so. For one of my favourite science writers beat them to it, by about 30 years. And in a rather entertaining manner. In an essay originally published in Natural History, Stephen Jay Gould approached this question via a discussion of … Mickey Mouse!

For Mickey, you see, started life as a much less lovable character than he is today. Gould describes him as a “rambunctious, even slightly sadistic fellow” when he first appeared in the film Steamboat Willie. And Mickey had a face to match the personality, with a longer nose, smaller eyes, and much lower forehead that he does today. But over time, “the blander and inoffensive Mickey became progressively more juvenile in appearance” – in other words, he was neotenised :) And in his essay A Biological Homage to Mickey Mouse, Gould asked, why? Why would the Disney artists have made these progressive changes to the famous rodent’s appearance?

As Gould points out, the German ethologist Konrad Lorenz first suggested that the morphological differences between adults and babies provide significant behavioural cues, with child-like features triggering affectionate responses from most adults. Lorenz characterised these features as innate releasing mechanisms, which included a head that was relatively large compared to the body, large eyes, a bulging cranium, & chubby cheeks. Of course, the fact that baby animals (for example, Science Alert’s little pig) also have these features has absolutely nothing to do with causing humans to view them affectionately (although we often do).

So, Gould suggests, the Disney artists – consciously or unconsciously – drew Mickey as more ‘child-like’ in order to evoke an affectionate response – however biologically inappropriate – in those viewing their movies or reading their comics. (After all, an unlovable protagonist was hardly likely to inspire people to keep on buying tickets or books!)

Gould concluded his essay by pointing out that humans, like Mickey, retain some childlike features into adulthood (& that has served us well):

A marked slowdown of developmental rates has triggered our neoteny. Primates are slow developers among mammals. We have very long periods of gestation, markedly extended childhoods, and the longest life span of any mammal. The morphological features of eternal youth have served us well. Our enlarged brain is, at least in part, a result of extending rapid prenatal growth rates to later ages. (In all mammals, the brain grows rapidly in utero but often very little after birth. We have extended this foetal phase into postnatal life.)

 

I’m reminded on the quote that was on the whiteboard down at the Blood Service rooms, last time I donated platelets:

Growing old is mandatory. Growing up is optional.

S.J.Gould (1980) A Biological Homage to Mickey Mouse in ”The Panda’s Thumb: More Reflections in Natural History”. W.W.Norton & Co. 

‘a newly discovered species of little people’ Alison Campbell Nov 09

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When the news first came out that Prof Mike Morwood & Thomas Sutikna were going to be giving a public lecture about Homo floresiensis, I was first excited & then seriously annoyed: yay! great topic, but rats! can’t get down to it.

So I was absolutely delighted to see the following in this week’s Royal Society news alerts. I get to hear it after all :) (And many thanks to David Bibby!)

 

8. Virtual event: ‘A newly discovered species of Little People’, 1 December

Note: Thanks to Professor David Bibby, Dean of Science, Victoria University of Wellington, this event will now be live streamed: https://new.livestream.com/i-filmscience/homofloresiensisDec2012

Coinciding with the celebrations centred around the much anticipated World Premiere of Peter Jackson’s Hobbit film, you are invited to attend a free public lecture on Homo floresiensis – a new human species discovered in 2003 on the Indonesian Island of Flores.  This new species is commonly referred to as the “Hobbit” – since it stood just over 1 m tall, had large feet and was capable of undertaking quite complex activities.

Two of the principal archaeologists involved in this remarkable discovery — Professor Mike Morwood (University of Wollongong, Australia) and Thomas Sutikna (Pusat Arkeologi Nasional, Indonesia) — will talk about the Hobbit’s discovery as well as ongoing excavations that seek to better understand this new and unique species of human. 

This event is generously sponsored and supported by Victoria University of Wellington, Te Papa, Wellington City Council, the Embassy of the Republic of Indonesia, and the NZ-Indonesian Friendship Council.

Details: 3 pm Saturday, 1 December, free public presentation & exhibition, Soundings Theatre, Te Papa.

Bookings are essential.  RSVP by emailing  with ‘Little People’ in the subject line or call 04 472 1000.

an interesting take on mousetrap evolution Alison Campbell Oct 30

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One of the catchphrases of Intelligent Design creationism is ‘irreducible complexity’ – the idea that in some complex biological systems, it’s impossible to remove any one part without causing the whole system to fail. Supposedly this means that such systems could not have evolved but must be the product of a ‘designer’. The term – in its most recent incarnation – was proposed by biochemist Michael Behe, but it’s effectively the same as William Paley’s 19th century concept of the watchmaker.

Behe used to be fond of using the ordinary, bog-standard, everyday mousetrap as an example. I have always found this just a tad unimaginative of him, as while removing (say) the spring would render the mousetrap incapable of doing its current job, this is not the same as saying that the remaining parts do not (& cannot) have some other function. (In a better, biological, example various constituent parts of the so-called ‘irreducibly complex’ flagellum bacteria** do actually have other functions, including adhesion to other cells.) I could, for example, throw the wooden platform of our old mousetrap*** at a mouse. Occasionally I might even hit it.

There are other possibilities for mousetrap evolution, described rather amusingly here (& hat-tip to Peter Bowditch of the Millenium Project).

 

** Incidentally, there is no such thing as ‘the’ bacterial flagellum.

*** I say ‘old’ because we haven’t used it for a while. These days the fat (6kg) furry ginger monster does the job quite satisfactorily. He probably falls on them.

 

traumatic insemination? ooh that sounds painful! Alison Campbell Sep 26

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Bedbugs. One of the critters that I’d prefer not to encounter on my travels. They come out at night and bite sleeping humans (& other animals), retreating during the day to their dark hideaways, often in cracks in furniture, walls, or floors. This sounds very insanitary but the species that bites humans, Cimex lectularius, isn’t generally regarded as a disease vector, and while a review published in 1963 found that bed bugs can carry a range of pathogens, the author also concluded that there was no scientific evidence of actual transmission of disease. At least one recent research study found that Rickettsia could survive in the insects’ blood for several days after infection, but again noted no evidence that the pathogen was spread in the bugs’ bites.

Now, I know that a bug’s gotta do what a bug’s gotta do. But even when it comes to their love lives, bed bugs are just not that, well, nice. For mating in the African bat bug (a relative of C.lectularius) sounds more like open warfare than a tender meeting of the sexes.

In this, and in other Cimex species (including lectularius), male bugs don’t mess around. Rather than find the female’s genitalia & follow a more normal route, the male simply stabs his penis into his mate’s abdomen. Ouch! Traumatic insemination, indeed. His sperm are injected into her blood-filled body cavity (insects have an open circulatory system) and make their way thence to her ovaries. Not only is the female physically damaged by this act, but it must also open the door to infection by pathogens. It turns out that males are also susceptible to damage as they are not too fussy about who they mate with, and at times another male ‘will do’.

The risk of harm is not trivial, and so individuals with any trait that might minimise the harm is going to be at a selective advantage (& if that trait has a heritable component, the underlying alleles will spread through the population’s gene pool). The result is the evolution of ‘paragenitals’ in both males and females: structures described as ‘extra genital funnel[s]‘ (Dolgin, 2007) that are easy to access and increase the odds that matings will be in that spot rather than randomly all over the abdomen. What’s more, the male’s penis enters a cavity lined with immune cells (like all animals, insects have an innate immune system), which reduces the odds that the mating partner will pick up an infection.

There is, of course, a disadvantage to a male bug in looking like a female – more males may start to hit on him. Consequently males’ paragenitals differ from females’ in that they are more open (their funnel is a different shape). But the story doesn’t stop there. It turns out that at least some female bat bugs’ paragenitals look more like those of the males – and that this deception works: counting the scars on their abdomens, & comparing the results with the scores for more girly girls, showed that male-like females had suffered fewer of those random mating stabbings.

I shall let the reporter at Evolution (on Facebook, where I first spotted this story) have the last word:

If you’re having trouble envisioning this cross-dressing insanity, picture this – the males are dressed like girls, and the girls dressed like guys who are dressed like girls, and everyone’s doing this to avoid sex.

(Avoid it as much as possible. But not completely – for that route would lead to the oblivion of extinction.)
E.Dolgin (2007) Bug sexual warfare drives gender bender: African bat bugs have two types of female genitalia Nature (published online 20 September 2007) doi: 10.1038/news070917-7

 

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