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Posts Tagged science & society

what made me a teacher Alison Campbell Aug 04

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This is a re-posting of something I originally wrote for the ‘other blog’ - I thought I’d publish it here too as part of the occasional ruminations by Marcus & me on the subject of science teaching :-)

Recently I’ve had occasion to reflect on the things that have made me the sort of teacher that I am. (Yes, I know there’s probably some grammatical issue with that sentence!) So I thought it might be good to write them down – for me, as a way of focusing my thinking, & also because maybe it would elicit other points of view. So, here goes…

I believe that behind every good teacher are a whole lot of other people. In my case the people on my list would include:

  • my parents, who encouraged all their children to follow their dreams & who passed on their own sense of wonder & curiosity about the world around us.
  • the inspirational high-school teachers teachers who not only cemented my love for science but also made me think seriously about the prospect of becoming a teacher myself. Mrs White, Mr Withers, Mr East – I owe you a lot. And my own mother, a teacher herself.
  • the then-Principal of Palmerston North Girls High School, Mrs Calvert: after I finished my PhD, I didn’t get a research scientist’s job straight away, so I began to look for alternatives. Mrs Calvert looked at a bright shiny new PhD graduate with no formal teaching experience, & must have seen potential there because she offered me a job as a biology teacher. I did my teacher training on the job, extramurally, and settled into the career that I thought I’d left behind when I began my postgraduate studies.
  • all the enormously supportive colleagues with whom I work, & have worked in the past: fellow high-school teachers, academics & the wonderful staff in our Teaching Development Unit, who let me bounce ideas around & give advice on trying new things, supporting me in taking a few risks.
  • my husband & family – thanks, guys! – who’ve put up with long hours & the seemingly endless piles of marking for quite a long time now.

But ultimately, you can’t be a teacher without students. And I’ve been lucky to have students who don’t seem to have minded being guinea pigs (well, not too much!) when I’ve tried new things, & who’ve been willing participants in the classroom. And that’s been wonderful, because to me the teacher is a learner too, & while my students are (I hope) learning from me, I’m also learning from them.

a follow-up on bleeding for the cause Alison Campbell Jun 18

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A couple of days ago, on my post about World Blood Donor day, one of my commenters noted that the NZ Blood Service is apparently going to follow their Canadian & Australian counterparts in banning people from giving blood if they’ve ever had Chronic Fatigue Syndrome. (At the moment folks who’ve had CFS are OK to donate once they’re fully recovered.) The reason for doing so is a purported link between CFS & a particular retrovirus (XMRV, or xenotropic murine retrovirus). 

But the link between CFS & XMRV is not particularly clear-cut. A study in Nevada found that >60% of CFS sufferers (N=101) also had traces of XMRV in their blood, compared to <4% of healthy controls (N=218). (Sorry, the link is to Science & may not work for all.) This sounded like something that ERV would be interested in & I was fairly sure she’d written something on it earlier, so I checked. I was right: she’s got a very interesting commentary on the methods used by the Nevada researchers. But she’s aslo cautious about the overall conclusions: fairly obviously XMRV isn’t the sole agent involved in CFS (if it’ is an agent), given that 33% of CFS patients didn’t express it in their blood. It would also be important to know where the samples came from: if the individuals with CFS lived where XMRV infection is common, then this would skew the results & make any relationship appear stronger than it is. And It does look as if at least some other labs haven’t been able to replicate these findings.

I can understand the Blood Service wanting to err on the side of caution, given issues with contaminated blood in the past (the Hep C/haemophilia problem, for example). Consequently I have to disagree with Smut on this one – it probably is better to be safe than sorry. A ban can always be reversed if the apparent XMRV-CFS link turns out to be non-existent after all.

On the other hand, I find it concerning that various commenters, including the lead researcher in the Nevada study, have made statements explicityly linking CFS & XMRV – when a causal relationship has yet to be demonstrated. (It could equally well be an opportunistic infection.) A commercial test for XMRV is now available. While this is valuable as a research tool (in measuring the incidence of infection, for example), identifying a particular individual as +ve for the virus can’t at present assist in actually treating the patient. However, in at least some cases people with both CFS and an XMRV infection are taking powerful anti-retroviral drugs (commonly used against AIDS) that can themselves have significant side effects, in the hope that ridding themselves of the virus will also cure the CFS. This seems to be drawing a long bow indeed.

world blood donor day Alison Campbell Jun 14

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Today (June 14) is World Blood Donor Day. Blood’s not a product that keeps particularly well (about a month, if we’re talking whole blood) & blood banks are always looking for new donors. In New Zealand, around 3,000 donations per week are needed in order to meet the demand.

So, if you’re been considering giving blood, put the thought into action & rock on down to your nearest NZ Blood Service centre. Giving blood’s a straightforward process & can make a profound difference to the lives of others.

on craig venter & his new life form Alison Campbell May 25

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There’s been a lot of hype – & some overwrought responses – surrounding the announcement that Craig Venter & his research team have ‘created’ a novel life form (a mycobacterium with a completely artificial genome). I wasn’t going to weigh into it.

And I’m still not – but I am going to reproduce in full an excellent comment by PZ Myers. (Go back to Pharyngula if you’d like to join in the comments there.) If after reading it you want more, then here’s the place to go: the ‘Reality Club’ at The Edge has an extensive & high-powered discussion around the issue.

I have to address one narrow point that is being discussed in the popular press and here on Edge: is Venter’s technological tour de force a threat to humanity, another atom bomb in the hands of children?

No.

There is a threat, but this isn’t it. If you want to worry, think about the teeming swarms of viruses, bacteria, fungi, and parasites that all want to eat you, that are aided (as we are defended) by the powers of natural selection–we are a delectable feast, and nature will inevitably lead to opportunistic dining. That is a far, far bigger threat to Homo sapiens, since they are the product of a few billion years of evolutionary refinement, not a brief tinkering probe into creation.

Nature’s constant attempts to kill us are often neglected in these kinds of discussions as a kind of omnipresent background noise. Technology sometimes seems more dangerous because it moves fast and creates novelty at an amazing pace, but again, Venter’s technology isn’t the big worry. It’s much easier and much cheaper to take an existing, ecologically successful bug and splice in a few new genes than to create a whole new creature from scratch…and unlike the de novo synthesis of life, that’s a technology that’s almost within the reach of garage-bound bio-hackers, and is definitely within the capacity of many foreign and domestic institutions. Frankenstein bacteria are harmless compared to the possibilities of hijacking E. coli or a flu virus to nefarious ends.

The promise and the long-term peril of the ability to synthesize new life is that it will lead to deeper understanding of basic biology. That, to me, is the real potential here: the ability to experimentally reduce the chemistry of life to a minimum, and use it as a reductionist platform to tease apart the poorly understood substrates of life. It’s a poor strategy for building a bioweapon, but a great one for understanding how biochemistry and biology work. That is the grand hope that we believe will give humanity an edge in its ongoing struggle with a dangerous nature: that we can bring forethought and deliberate, directed opposition to our fellow organisms that bring harm to us, and assistance to those that benefit us. And we need greater knowledge to do that.

Of course more knowledge brings more power, and more possibility of catastrophe. But to worry over a development that is far less immediately dangerous than, say, site-directed mutagenesis, is to have misplaced priorities and to be basically recoiling from the progress of science. We either embrace the forward rush to greater knowledge, or we stand still and die. Alea iacta est; I look forward to decades of revolutionary new ideas and discoveries and technologies. May we have many more refinements of Venter’s innovation, a flowering of novel life forms, and deeper analyses of the genome.

turning kids on to science: the spectrum revisited Alison Campbell Nov 03

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The following quote comes from an article about science clubs in the UK, aimed at 12 & 13-year olds & intended to stimulate interest in science:

“The ultimate aim is to enthuse young people about learning again…We want the clubs to help kids to see that science isn’t just about crazy, white-haired men in labs cooking up noxious substances, and that engineering doesn’t just involve greasy car mechanics. We want to encourage them to learn that Stem (Science, Technology, Engineering, Maths) subjects are a really positive force all around us – and to have fun while doing so.”

And apparently the primary-school kids hanging around some of the practical classes get a blast, too. Which is as it should be – children are fascinated with the way the world works, & the more we can further that interest & encourage them to get into science & related areas, the better.

Our own government appears to recognise the significance of science & technology: from Wayne Mapp’s speech at Waiariki Institute of Technology, on October 15:

The next area of achievement I am focused on is the performance of the research, science and technology system. As the Prime Minister said last month, at the launch of the Primary Growth Partnership, “we need to put science at the heart of this National-led Government “.

And the Royal Society recently announced the list of primary school teachers who have won fellowships for the coming year, during which they’ll work alongside scientists in a range of host organisations. The intention is that they’ll become science curriculum leaders on returning to their schools; a worthwhile aim given the woefuly low amount of time given over to science in the primary school curriculum:  ”science education is currently not high on the priority list at primary schools, with an average of just one hour per week taught.”

It’s hard to see how all this sits in the light of the government’s recent announcement that there will be no additional funding to support science & the arts in primary schools next year, with the money going instead to the new ‘national standards’ in the three Rs. As Paul Callaghan said in his lecture, Beyond the farm and the theme park, our future lies in science and technology, and this obviously requires a society that values those subjects & is (to some degree at least) scientifically literate. And the spark of interest in science should be lit, and nurtured, in the youngest members of our society.  I congratulate the Royal Society primary school fellowship holders & wish them well – but they will need signficant support on returning to their classrooms if we are to maximise this investment in our future.

thoughts on xenotransplantation Alison Campbell Sep 30

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This is a re-post of one I wrote earlier this year. For a bit of background: one of the topics that year 13 Biology students can study requires them to do research around a ‘current’ or ‘controversial’ issue such as stem cells or xenotransplantation. I wrote a brief one on stem cells (really, more a case of pointing in the right direction), but then did a longer piece on xenotransplantation, which follows here.

The daughter said recently that having done stem cells, I should also look at some of the other topics you can choose from for your research exercise. She suggested xenotransplantation, as it seems quite a few of her friends have chosen that one. So I’ll have a go :-)

Xenotransplantation is where cells, tissues, or organs from an individual of one species are transplanted into an individual from another species. (’Xeno-’ means foreign; you see it also in the word ‘xenophobic’, meaning fear of foreigners.) One of the drivers for investigating xenotransplantation into humans is the fact that there is a global shortage of human organ donors, while the use of species such as pigs has the potential to provide an almost unlimited pool of organs. (My driving licence identifies me as a donor. But I”m fully aware that my wish to give any useful bits to others, after my death, might not be honored if members of my family objected to the idea. Hopefully they’ll respect my wishes. After all, the various bits & pieces will no longer be of any use to me!)

The first time I remember hearing about xenotransplantation back in 1984, although not, as I recall, using that specific name. It was the case of ‘Baby Faye’, who was born with hypoplastic left heart syndrome (the left side of the heart & the associated blood vessels are severely underdeveloped): doctors transplanted a baboon heart into the infant in an attempt to keep her alive until a suitable human donor became available. (However, this wasn’t the earliest case of xenotransplantation – it seems organ transplant  was first tried as far back as 1913, when doctors unsuccessfully transplanted a monkey kidney into a child whose kidneys had been damaged by mercury poisoning. Organs from baboons & other non-human primates have been used in transplants on several occasions, and it appears that frog skin was used in the late 1800s in treating patients needing skin grafts…)

Today the focus has shifted from primates to pigs. While the non-human primates are genetically closer to us, their organs are smaller – a baboon heart might do for a baby, but not an adult human! Nor can they be obtained in large numbers. Many primate species are under threat, or critically endangered. And many people would find it distasteful to consider killing other primates for the purpose of keeping humans alive.

Pigs, on the other hand, are closer to us in body size & mass, & are killed for food as it is, so it could be argued that taking organs for xenotransplantation would be less of a problem in ethical terms. Howver, pig organs are more likely to be rejected by their new host, & this has led to the idea of genetically engineering pigs so that they express human marker proteins on their cell membranes, instead of pig markers. This would reduce the likelihood of an extreme rejection reaction. And there are major concerns about the possibility of viral diseases, in particular, making the jump from pig to human via the new owner of the organs, although it’s been suggested that these could be reduced or eliminated in transgenic pigs.

But we also need to consider a range of other issues related to xenotransplantation. For example, people having Jewish or Muslum beliefs would probably find the idea of having pig tissues transplanted into them, quite abhorrent. Are there other cultural aversions to xenotransplants? What about the animals involved – do they suffer psychologically or physically before their deaths? Do we have the right to take their lives for this purpose? And the new ‘owner’ of the organ – would the presence of the xenotransplant alter them in some way? (There’s a Vatican document with a very thorough discussion of some of these ethical issues here.)

So, you can see that you’d got a lot to consider, if you chose this topic!

food & folate Alison Campbell Sep 26

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This is a re-posting of an article I wrote back in July. I thought I’d repost it here as I’ve been on a bit of a science/health/pseudoscience kick lately :-)

In the July 13 Herald was an article on the inclusion of folic acid (aka folate) in bread. This has hit the news recently because (among other things) bakers are concerned about the cost of adding this supplement to bread. (One figure that’s been bandied about is that someone would have to eat 11 slices of bread to get their recommended daily dose, but this surely a ’straw man’ argument: while the NZ diet tends to be low in folate it’s not at zero - any amount of bread would supplement that low intake.)

There are a number of issues associated with this story, one being a perceived toxicity associated with folate & another being one of the ethics of mass medicalisation of a population.

But the one I want to touch on to begin with is related to this paragraph: On TV One’s Q&A programme, Ms Wilkinson faced criticism from Green MP Sue Kedgley, then presenter Paul Holmes, followed by all three members of the analysis panel. I’d assumed that this ‘analysis panel’ would include some input from someone who could give expert opinion on the science behind the folate-in-bread proposal. But from reading on, the panel members comprised a political scientist, a local-body politician, & a union representative. I suppose that’s to be expected in a program with an emphasis on political questions, but it’s still disappointing as it would have been useful to have that science input included.

So, why are we talking about adding folate/folic acid to bread anyway? The quick answer is, because we’re required to under an agreement with Australia. The underlying rationale is that a lack of folate in early pregnancy (typically before a woman may even be aware that she’s pregnant) is implicated in neural tube defects such as spina bifida. (Other environmental influences include insulin-dependent diabetes, & some types of medication.) In some estimates up to 90% of the population is folate-deficient to some degree, with a number of underlying reasons for this. Hence the former Health minister’s comment that the change would see four to 14 fewer neural tube defect-affected pregnancies a year - women would not get the recommended 400 microgram daily intake from bread alone, but any consumption would add to their existing intake.

Neural tube defects (NTDs) occur when the hollow neural tube -  which gives rise to both brain and nerve cord - doesn’t form properly, and include disorders such as spina bifida. It’s estimated that between 50 & 70% of NTDs could be prevented by increasing the amount of folate in a woman’s diet, especially during the period from 1 month prior to conception through to 3 months into the pregnancy. Obviously it’s not really possible to predict the date of conception, so ideally a woman would be ensuring her diet had the recommended level of folate from the time she began trying to conceive. Of course, things are complicated by the involvement of those other environmental factors, plus there may also be a genetic tendency to NTDs in some families. (Because of this one review recommends that – in developing countries anyway – iron-folate tablets could be provided to parents who already have a child with an NTD, rather than trying to ensure that all women take a supplement prior to & early in pregnancy.) A 2001 Cochrane review of the use of folate to prevent NTDs states that periconceptional folate supplementation has a strong protective effect against neural tube defects, and makes the further recommendation that information about folate should be made more widely available throughout the health and education systems. And the authors conclude that the benefits and risks of fortifying basic food stuffs, such as flour, with added folate remain unresolved.

So that’s the crunch point really, isn’t it? Just what are the benefits & risks, and the costs involved?

If the estimate of 4 – 14 fewer NTD-affected pregnancies each year is accurate, then that probably involves a reasonably substantial decrease of social and economic costs – the immediate & ongoing cost of supporting affected individuals and their families can be quite high. (For an individual with severe spina bifida, one estimate suggests a lifetime cost of around $500,000 dollars.) In many countries adding folate to flour is seen as the most cost-effective way of reducing NTDs. But is this sufficient reason for treating entire populations (’mass medicalisation’? After all, at most only half the population is ever likely to become pregnant, & in New Zealand ‘only’ about 1 in 1000 pregnancies involves an NTD.

It does seem that folate may have wider benefits – low levels of folic acid in the diet may possibly be linked with a decline in the self-repair capacity of DNA (in relation to this they’ve also been linked to intestinal cancers in mice – but bear in mind my previous comments with regard from generalising from mice to men!). There’s also a suggestion that folate deficiency could be implicated in cardiovascular disease. In other words, it’s quite possible that supplementation of folate through measures like flour fortification would have benefits over and above those flowing from a reduction in NTDs.

What about the risks, then? Apparently high doses of folate (higher than the maximum recommended daily allowance) can mask the effects of vitamin B12 deficiency – in such cases the harmful effects of this particular deficiency would thus go untreated. And while one person quoted in the original press story was concerned that folate supplementation could be linked with an increased risk of cancer, I couldn’t find anything supporting this in an (admittedly quick) search of the literature. But in any case, I would have thought that if anythng, low folate levels would be more likely to be implicated in cancer risk.

In other words, this is another complex story – and one where the inclusion of a science-based viewpoint would have added some useful depth to the original article.